Automated identification of Monogeneans using digital image processing and K-nearest neighbour approaches

Kalafi, E.Y. and Tan, W.B. and Town, C. and Dhillon, S.K. (2016) Automated identification of Monogeneans using digital image processing and K-nearest neighbour approaches. BMC Bioinformatics, 17 (S19). ISSN 1471-2105

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Official URL: http://dx.doi.org/10.1186/s12859-016-1376-z

Abstract

Background: Monogeneans are flatworms (Platyhelminthes) that are primarily found on gills and skin of fishes. Monogenean parasites have attachment appendages at their haptoral regions that help them to move about the body surface and feed on skin and gill debris. Haptoral attachment organs consist of sclerotized hard parts such as hooks, anchors and marginal hooks. Monogenean species are differentiated based on their haptoral bars, anchors, marginal hooks, reproductive parts' (male and female copulatory organs) morphological characters and soft anatomical parts. The complex structure of these diagnostic organs and also their overlapping in microscopic digital images are impediments for developing fully automated identification system for monogeneans (LNCS 7666:256-263, 2012), (ISDA; 457-462, 2011), (J Zoolog Syst Evol Res 52(2): 95-99. 2013;). In this study images of hard parts of the haptoral organs such as bars and anchors are used to develop a fully automated identification technique for monogenean species identification by implementing image processing techniques and machine learning methods. Result: Images of four monogenean species namely Sinodiplectanotrema malayanus, Trianchoratus pahangensis, Metahaliotrema mizellei and Metahaliotrema sp. (undescribed) were used to develop an automated technique for identification. K-nearest neighbour (KNN) was applied to classify the monogenean specimens based on the extracted features. 50% of the dataset was used for training and the other 50% was used as testing for system evaluation. Our approach demonstrated overall classification accuracy of 90%. In this study Leave One Out (LOO) cross validation is used for validation of our system and the accuracy is 91.25%. Conclusions: The methods presented in this study facilitate fast and accurate fully automated classification of monogeneans at the species level. In future studies more classes will be included in the model, the time to capture the monogenean images will be reduced and improvements in extraction and selection of features will be implemented.

Item Type: Article
Uncontrolled Keywords: Automated image recognition; Monogenean; K-nearest neighbour; Digital image processing
Subjects: Q Science > Q Science (General)
Q Science > QH Natural history > QH301 Biology
Divisions: Faculty of Science > Dept of Science and Technology Studies
Depositing User: Ms. Juhaida Abd Rahim
Date Deposited: 14 Aug 2017 04:19
Last Modified: 14 Aug 2017 04:19
URI: http://eprints.um.edu.my/id/eprint/17684

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