Assessment of predictive models for chlorophyll-a concentration of a tropical lake.

Malek, S.; Syed Ahmad, S.M.; Singh, S.K.; Milow, P.; Salleh, A. (2011) Assessment of predictive models for chlorophyll-a concentration of a tropical lake. BMC Bioinformatics. ISSN 1471-2105

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Abstract

BACKGROUND: This study assesses four predictive ecological models; Fuzzy Logic (FL), Recurrent Artificial Neural Network (RANN), Hybrid Evolutionary Algorithm (HEA) and multiple linear regressions (MLR) to forecast chlorophyll- a concentration using limnological data from 2001 through 2004 of unstratified shallow, oligotrophic to mesotrophic tropical Putrajaya Lake (Malaysia). Performances of the models are assessed using Root Mean Square Error (RMSE), correlation coefficient (r), and Area under the Receiving Operating Characteristic (ROC) curve (AUC). Chlorophyll-a have been used to estimate algal biomass in aquatic ecosystem as it is common in most algae. Algal biomass indicates of the trophic status of a water body. Chlorophyll- a therefore, is an effective indicator for monitoring eutrophication which is a common problem of lakes and reservoirs all over the world. Assessments of these predictive models are necessary towards developing a reliable algorithm to estimate chlorophyll- a concentration for eutrophication management of tropical lakes. RESULTS: Same data set was used for models development and the data was divided into two sets; training and testing to avoid biasness in results. FL and RANN models were developed using parameters selected through sensitivity analysis. The selected variables were water temperature, pH, dissolved oxygen, ammonia nitrogen, nitrate nitrogen and Secchi depth. Dissolved oxygen, selected through stepwise procedure, was used to develop the MLR model. HEA model used parameters selected using genetic algorithm (GA). The selected parameters were pH, Secchi depth, dissolved oxygen and nitrate nitrogen. RMSE, r, and AUC values for MLR model were (4.60, 0.5, and 0.76), FL model were (4.49, 0.6, and 0.84), RANN model were (4.28, 0.7, and 0.79) and HEA model were (4.27, 0.7, and 0.82) respectively. Performance inconsistencies between four models in terms of performance criteria in this study resulted from the methodology used in measuring the performance. RMSE is based on the level of error of prediction whereas AUC is based on binary classification task. CONCLUSIONS: Overall, HEA produced the best performance in terms of RMSE, r, and AUC values. This was followed by FL, RANN, and MLR.

Item Type: Article
Creators:
  1. Malek, S.(University of Malaya)
  2. Syed Ahmad, S.M.
  3. Singh, S.K.
  4. Milow, P.
  5. Salleh, A.
Journal or Publication Title: BMC Bioinformatics
Additional Information: Institute of Biological Sciences, Faculty of Science, University of Malaya, Kuala Lumpur, Malaysia. sorayya@um.edu.my
Uncontrolled Keywords: Biological Sciences
Subjects: R Medicine
Divisions: Faculty of Medicine > School of Biological Sciences
Depositing User: Mr. Faizal Hamzah
Date Deposited: 02 Jul 2012 09:46
Last Modified: 02 Jul 2012 09:46
URI: http://eprints.um.edu.my/id/eprint/3408

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